PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033838m
Common NameCICLE_v10033838mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 101aa    MW: 11795.5 Da    PI: 10.6469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033838mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.2e-062547123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C+  F r  nL+ H r+H
  Ciclev10033838m 25 YVCEICNHGFQRDQNLQMHRRRH 47
                     9*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.86E-61447No hitNo description
PROSITE profilePS5015711.3232552IPR007087Zinc finger, C2H2
SMARTSM003550.0172547IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-52547IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
SMARTSM003551306696IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MLENNTNINA PSSSHPFTSS ENDRYVCEIC NHGFQRDQNL QMHRRRHKVP RKLLKRETKV  60
VKKRVFVCPE AGCLHHDSCH ALGDFVGIKK HFRRKHNNHK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436818.18e-70hypothetical protein CICLE_v10033838mg
SwissprotF4IPE39e-44IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
SwissprotQ9C9X77e-44IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLV4SQG99e-70V4SQG9_9R
STRINGPOPTR_0008s13980.11e-46(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.11e-36indeterminate(ID)-domain 16